bcl2fastq2: Script for download-and-build

	#!/bin/bash
	# tweak for your own needs
	set -e; set -o pipefail; set -x
	# http://support.illumina.com/downloads/bcl2fastq_conversion_software.html
	BASE=bcl2fastq2-v2.15.0.4
	# like the docs say on page 5 of bcl2fastq2-v215-User-Guide-15051736-C.pdf
	TMP=./tmp
	# make sure we start fresh
	rm -rf ${TMP}
	mkdir ${TMP}
	cd ${TMP}
	export TMP=`pwd`
	export SOURCE=${TMP}/bcl2fastq
	export BUILD=${TMP}/${BASE}-build
	# depending on where you want it installed
	#export INSTALL_DIR=/usr/local/${BASE}
	export INSTALL_DIR=${TMP}/install/usr/local/${BASE}
	wget ftp://webdata2:webdata2@ussd-ftp.illumina.com/downloads/Software/bcl2fastq/${BASE}.tar.gz
	tar -xvzf ${BASE}.tar.gz
	mkdir ${BUILD}
	cd ${BUILD}
	${SOURCE}/src/configure --prefix=${INSTALL_DIR}
	make
	make install