The NextSeq 500 has a new two-dye system
The NextSeq 500 has a new two-dye system for measuring
base-incorporation, with red dye measuring C, green dye measuring T, a
mix of dyes measuring A and no dye measuring G. I think it’s the latter
two that are causing most concern. I’ve little doubt that this new
system will introduce bias. Sure, it will probably be solved by
chemistry and software upgrades, but when?
excerpt from https://biomickwatson.wordpress.com/2014/01/17/7-reasons-why-the-nextseq-500-is-a-strange-choice/
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