Wednesday, November 28, 2012

Annotations Using SnpEff and VariantAnnotator

Adding Genomic Annotations Using SnpEff and VariantAnnotator - GATK-Forum

http://gatkforums.broadinstitute.org/discussion/comment/1574/#Comment_1574


Annotation tools for SNP/indel calling results:
snpEff is for the indel annotation and because it's running on java and the process of annotation is pretty fast, it's very amenable to run off your personal desktop.

other tools: wAnnovar, Seattle Seq

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