Wednesday, October 10, 2012

Babraham Bioinformatics site


http://www.bioinformatics.babraham.ac.uk/projects/download.html#fastqc

Download Babraham Bioinformatics Projects

All Babraham Bioinformatics code is released under the GNU General public license. You should be aware that some of the downloads on this page include code from other projects which is available under different license terms.
All Babraham Bioinformatics projects are distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
If you have any problems with any of the software you downloaded from here then please report them to us and we'll do our best to get them sorted out.
If you want to stay up to date with changes to our existing projects, or with new software we have released then you can follow us on twitter You can also see demonstrations of our software on our YouTube channel

ASAP Performing allele-specific alignments in Next-Gen Sequencing samples with mixed genetic background

Bareback A tool to shuffle low complexity sequence to the end of Illumina sequencing runs

Bismark A bisulfite read mapper and methylation caller

ChIPMonk ChIP-on-Chip analysis tool

Difference Tracker A particle tracker for faint moving particles

FastQC A quality control application for high throughput sequence data

FastQ Screen A screening application for high througput sequence data

FocalPoint Image Viewer

FRETSaw FRET Image Viewer

HiCUP Pipeline for analysing Hi-C data

mzViewer mzData Viewer

Realyser Real Time PCR Normalisation tool

SeqMonk Mapped Sequence Analysis Tool

Sherman bisulfite-treated Read FastQ Simulator

Sierra A simple LIMS for sequencing facilities

SparkSpotter ImageJ plugin to identify 'Spark' events

StackMeasure ImageJ Plugin to identify and measure feautres in images

Trim Galore! Consistent quality and adapter trimming for RRBS or standard FastQ files

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